HL_6YSI_034

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6YSI|1|1|U|1384, 6YSI|1|1|U|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSI_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0863

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YSI|1|1|G|1377
6YSI|1|1|U|1378
6YSI|1|1|U|1379
6YSI|1|1|A|1380
6YSI|1|1|A|1381
6YSI|1|1|U|1382
6YSI|1|1|A|1383
6YSI|1|1|U|1384
6YSI|1|1|U|1385
6YSI|1|1|C|1386

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L23