HL_6YSI_035
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCGUUGGUUGUC
- Length
- 12 nucleotides
- Bulged bases
- 6YSI|1|1|U|1441, 6YSI|1|1|U|1442, 6YSI|1|1|U|1448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSI_035 not in the Motif Atlas
- Geometric match to HL_5J7L_200
- Geometric discrepancy: 0.22
- The information below is about HL_5J7L_200
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_08100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YSI|1|1|G|1438
6YSI|1|1|C|1439
6YSI|1|1|G|1440
6YSI|1|1|U|1441
6YSI|1|1|U|1442
6YSI|1|1|G|1443
6YSI|1|1|G|1444
6YSI|1|1|U|1445
6YSI|1|1|U|1446
6YSI|1|1|G|1447
6YSI|1|1|U|1448
6YSI|1|1|C|1449
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L17
Coloring options: