HL_6YSI_048
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6YSI|1|1|A|2019, 6YSI|1|1|A|2020, 6YSI|1|1|G|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSI_048 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1159
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6YSI|1|1|G|2016
6YSI|1|1|U|2017
6YSI|1|1|G|2018
6YSI|1|1|A|2019
6YSI|1|1|A|2020
6YSI|1|1|G|2021
6YSI|1|1|A|2022
6YSI|1|1|U|2023
6YSI|1|1|G|2024
6YSI|1|1|C|2025
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L21
- Chain X
- 50S ribosomal protein L32
Coloring options: