HL_6YSI_050
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6YSI|1|1|G|2239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSI_050 not in the Motif Atlas
- Homologous match to HL_5J7L_186
- Geometric discrepancy: 0.09
- The information below is about HL_5J7L_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6YSI|1|1|C|2237
6YSI|1|1|U|2238
6YSI|1|1|G|2239
6YSI|1|1|G|2240
6YSI|1|1|G|2241
6YSI|1|1|G|2242
6YSI|1|1|C|2243
6YSI|1|1|G|2244
6YSI|1|1|G|2245
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L27
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