HL_6YSI_065

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAGACUAG

Length

9 nucleotides

Bulged bases

6YSI|1|1|G|2809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSI_065 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1452

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6YSI|1|1|C|2808
6YSI|1|1|G|2809
6YSI|1|1|A|2810
6YSI|1|1|G|2811
6YSI|1|1|A|2812
6YSI|1|1|C|2813
6YSI|1|1|U|2814
6YSI|1|1|A|2815
6YSI|1|1|G|2816

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain J

50S ribosomal protein L17

Chain L

50S ribosomal protein L19