HL_6YSI_067
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUUCCCG
- Length
- 7 nucleotides
- Bulged bases
- 6YSI|1|5|C|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSI_067 not in the Motif Atlas
- Geometric match to HL_5J7L_203
- Geometric discrepancy: 0.1055
- The information below is about HL_5J7L_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6YSI|1|5|C|37
6YSI|1|5|U|38
6YSI|1|5|U|39
6YSI|1|5|C|40
6YSI|1|5|C|41
6YSI|1|5|C|42
6YSI|1|5|G|43
Current chains
- Chain 5
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
- Chain K
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L31
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