HL_6YSS_027

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGCUUAGAAGCAGCC

Length

15 nucleotides

Bulged bases

6YSS|1|A|U|1066, 6YSS|1|A|A|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSS_027 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.2739

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6YSS|1|A|G|1062
6YSS|1|A|G|1063
6YSS|1|A|C|1064
6YSS|1|A|U|1065
6YSS|1|A|U|1066
6YSS|1|A|A|1067
6YSS|1|A|G|1068
6YSS|1|A|A|1069
6YSS|1|A|A|1070
6YSS|1|A|G|1071
6YSS|1|A|C|1072
6YSS|1|A|A|1073
6YSS|1|A|G|1074
6YSS|1|A|C|1075
6YSS|1|A|C|1076

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11