3D structure

PDB id
6YSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GUG(6MZ)AGAUGC
Length
10 nucleotides
Bulged bases
6YSS|1|A|A|2031, 6YSS|1|A|G|2032
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YSS_049 not in the Motif Atlas
Homologous match to HL_5J7L_183
Geometric discrepancy: 0.0831
The information below is about HL_5J7L_183
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
7

Unit IDs

6YSS|1|A|G|2027
6YSS|1|A|U|2028
6YSS|1|A|G|2029
6YSS|1|A|6MZ|2030
6YSS|1|A|A|2031
6YSS|1|A|G|2032
6YSS|1|A|A|2033
6YSS|1|A|U|2034
6YSS|1|A|G|2035
6YSS|1|A|C|2036

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain R
50S ribosomal protein L21

Coloring options:


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