HL_6YSS_103
3D structure
- PDB id
- 6YSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 6YSS|1|w|A|38
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YSS_103 not in the Motif Atlas
- Homologous match to HL_1B23_002
- Geometric discrepancy: 0.3296
- The information below is about HL_1B23_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YSS|1|w|G|30
6YSS|1|w|A|31
6YSS|1|w|PSU|32
6YSS|1|w|U|33
6YSS|1|w|G|34
6YSS|1|w|A|35
6YSS|1|w|A|36
6YSS|1|w|MIA|37
6YSS|1|w|A|38
6YSS|1|w|PSU|39
6YSS|1|w|C|40
Current chains
- Chain w
- P-site tRNAPhe
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
- Chain x
- mRNA
Coloring options: