3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
6YST|1|A|U|958, 6YST|1|A|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YST_025 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.1124
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YST|1|A|G|954
6YST|1|A|PSU|955
6YST|1|A|G|956
6YST|1|A|C|957
6YST|1|A|U|958
6YST|1|A|A|959
6YST|1|A|A|960
6YST|1|A|C|961
6YST|1|A|G|962
6YST|1|A|U|963

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6605 s
Application loaded.