HL_6YST_098

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6YST|1|a|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YST_098 not in the Motif Atlas

Homologous match to HL_6CZR_101

Geometric discrepancy: 0.1864

The information below is about HL_6CZR_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6YST|1|a|G|1356
6YST|1|a|A|1357
6YST|1|a|U|1358
6YST|1|a|C|1359
6YST|1|a|A|1360
6YST|1|a|G|1361
6YST|1|a|A|1362
6YST|1|a|A|1363
6YST|1|a|U|1364
6YST|1|a|G|1365
6YST|1|a|C|1366

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain m

30S ribosomal protein S13

Chain n

30S ribosomal protein S14