HL_6YST_104

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAG

Length

4 nucleotides

Bulged bases

6YST|1|A|A|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YST_104 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3318

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6YST|1|A|U|545
6YST|1|A|U|546
6YST|1|A|A|547
6YST|1|A|G|548

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L21