HL_6YSU_027

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCUUAGAAGCAGCC

Length

15 nucleotides

Bulged bases

6YSU|1|A|U|1065, 6YSU|1|A|A|1067, 6YSU|1|A|G|1068, 6YSU|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_027 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.274

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6YSU|1|A|G|1062
6YSU|1|A|G|1063
6YSU|1|A|C|1064
6YSU|1|A|U|1065
6YSU|1|A|U|1066
6YSU|1|A|A|1067
6YSU|1|A|G|1068
6YSU|1|A|A|1069
6YSU|1|A|A|1070
6YSU|1|A|G|1071
6YSU|1|A|C|1072
6YSU|1|A|A|1073
6YSU|1|A|G|1074
6YSU|1|A|C|1075
6YSU|1|A|C|1076

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11