HL_6YSU_078

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_078 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.122

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YSU|1|a|A|320
6YSU|1|a|A|321
6YSU|1|a|C|322
6YSU|1|a|U|323
6YSU|1|a|G|324
6YSU|1|a|A|325
6YSU|1|a|G|326
6YSU|1|a|A|327
6YSU|1|a|C|328
6YSU|1|a|A|329
6YSU|1|a|C|330
6YSU|1|a|G|331
6YSU|1|a|G|332
6YSU|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20