HL_6YSU_106

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCUUAUGCG

Length

10 nucleotides

Bulged bases

6YSU|1|A|U|1174, 6YSU|1|A|A|1175, 6YSU|1|A|C|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSU_106 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3984

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6YSU|1|A|C|1170
6YSU|1|A|G|1171
6YSU|1|A|C|1172
6YSU|1|A|U|1173
6YSU|1|A|U|1174
6YSU|1|A|A|1175
6YSU|1|A|U|1176
6YSU|1|A|G|1177
6YSU|1|A|C|1178
6YSU|1|A|G|1179

Current chains

Chain A

23S ribosomal RNA

Nearby chains