HL_6YT9_001
3D structure
- PDB id
- 6YT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- 6YT9|1|2|U|16
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YT9_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.066
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6YT9|1|2|U|14
6YT9|1|2|U|15
6YT9|1|2|U|16
6YT9|1|2|G|17
6YT9|1|2|A|18
6YT9|1|2|U|19
6YT9|1|2|C|20
6YT9|1|2|A|21
6YT9|1|2|U|22
6YT9|1|2|G|23
6YT9|1|2|G|24
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Small subunit ribosomal RNA; SSU rRNA
- Chain f
- 30S ribosomal protein S5
- Chain m
- 30S ribosomal protein S12
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