HL_6YT9_010

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6YT9|1|2|U|463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YT9_010 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2998

The information below is about HL_5J7L_012

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6YT9|1|2|G|458
6YT9|1|2|U|459
6YT9|1|2|U|460
6YT9|1|2|A|461
6YT9|1|2|A|462
6YT9|1|2|U|463
6YT9|1|2|A|464
6YT9|1|2|C|465
6YT9|1|2|C|466

Current chains

Chain 2

16S ribosomal RNA

Nearby chains