HL_6YT9_018

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YT9_018 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.3148

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6YT9|1|4|U|1446
6YT9|1|4|G|1447
6YT9|1|4|C|1448
6YT9|1|4|A|1449
6YT9|1|4|A|1450
6YT9|1|4|A|1451

Current chains

Chain 4

16S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA