HL_6Z1P_004

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_004 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.2419

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Aa|C|172
6Z1P|1|Aa|A|173
6Z1P|1|Aa|A|174
6Z1P|1|Aa|U|175
6Z1P|1|Aa|U|176
6Z1P|1|Aa|G|177

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain AC

39-S ribosomal protein L47

Chain AF

bL35m

Chain AO

mL64

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Ae

50S ribosomal protein L4

Chain Aq

Ribosomal protein L15, putative