HL_6Z1P_005

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_005 not in the Motif Atlas

Geometric match to HL_5J7L_141

Geometric discrepancy: 0.1897

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6Z1P|1|Aa|C|190
6Z1P|1|Aa|G|191
6Z1P|1|Aa|G|192
6Z1P|1|Aa|U|193
6Z1P|1|Aa|G|194
6Z1P|1|Aa|A|195
6Z1P|1|Aa|G|196

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain AF

bL35m

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Aq

Ribosomal protein L15, putative