HL_6Z1P_007

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

6Z1P|1|Aa|U|252, 6Z1P|1|Aa|A|253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_007 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1338

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Aa|C|250
6Z1P|1|Aa|A|251
6Z1P|1|Aa|U|252
6Z1P|1|Aa|A|253
6Z1P|1|Aa|G|254

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Ae

50S ribosomal protein L4

Chain Ay

50S ribosomal protein L24