HL_6Z1P_008

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAAAGUC

Length

9 nucleotides

Bulged bases

6Z1P|1|Aa|G|260, 6Z1P|1|Aa|A|261, 6Z1P|1|Aa|A|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_008 not in the Motif Atlas

Geometric match to HL_7RQB_012

Geometric discrepancy: 0.2293

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6Z1P|1|Aa|G|258
6Z1P|1|Aa|U|259
6Z1P|1|Aa|G|260
6Z1P|1|Aa|A|261
6Z1P|1|Aa|A|262
6Z1P|1|Aa|A|263
6Z1P|1|Aa|G|264
6Z1P|1|Aa|U|265
6Z1P|1|Aa|C|266

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Ae

50S ribosomal protein L4

Chain Ay

50S ribosomal protein L24