HL_6Z1P_011

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_011 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.1915

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6Z1P|1|Ab|C|365
6Z1P|1|Ab|G|366
6Z1P|1|Ab|C|367
6Z1P|1|Ab|G|368
6Z1P|1|Ab|A|369
6Z1P|1|Ab|G|370

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AI

Ribosomal protein L27

Chain Aa

LSU rRNA_1

Chain Ae

50S ribosomal protein L4