3D structure

PDB id
6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mitochondrial ribosome from Tetrahymena thermophila
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAUUUUAUAAUAUCUUAAAAGAAC
Length
24 nucleotides
Bulged bases
6Z1P|1|Ab|A|390, 6Z1P|1|Ab|A|406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Z1P|1|Ab|G|384
6Z1P|1|Ab|A|385
6Z1P|1|Ab|U|386
6Z1P|1|Ab|U|387
6Z1P|1|Ab|U|388
6Z1P|1|Ab|U|389
6Z1P|1|Ab|A|390
6Z1P|1|Ab|U|391
6Z1P|1|Ab|A|392
6Z1P|1|Ab|A|393
6Z1P|1|Ab|U|394
6Z1P|1|Ab|A|395
6Z1P|1|Ab|U|396
6Z1P|1|Ab|C|397
6Z1P|1|Ab|U|398
6Z1P|1|Ab|U|399
6Z1P|1|Ab|A|400
6Z1P|1|Ab|A|401
6Z1P|1|Ab|A|402
6Z1P|1|Ab|A|403
6Z1P|1|Ab|G|404
6Z1P|1|Ab|A|405
6Z1P|1|Ab|A|406
6Z1P|1|Ab|C|407

Current chains

Chain Ab
LSU rRNA_2

Nearby chains

Chain AT
Signal peptide-binding domain protein
Chain Aa
LSU rRNA_1
Chain Aw
Ribosomal protein L22/L17e
Chain Ay
50S ribosomal protein L24

Coloring options:

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