HL_6Z1P_014
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 6Z1P|1|Ab|A|465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z1P_014 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.1457
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6Z1P|1|Ab|U|457
6Z1P|1|Ab|U|458
6Z1P|1|Ab|U|459
6Z1P|1|Ab|U|460
6Z1P|1|Ab|G|461
6Z1P|1|Ab|C|462
6Z1P|1|Ab|A|463
6Z1P|1|Ab|U|464
6Z1P|1|Ab|A|465
6Z1P|1|Ab|A|466
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain Ad
- 50S ribosomal protein L3
- Chain Aq
- Ribosomal protein L15, putative
- Chain Au
- 50S ribosomal protein L20
- Chain Av
- 50S ribosomal protein L21
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