HL_6Z1P_016

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_016 not in the Motif Atlas

Homologous match to HL_7RQB_020

Geometric discrepancy: 0.2112

The information below is about HL_7RQB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6Z1P|1|Ab|C|523
6Z1P|1|Ab|G|524
6Z1P|1|Ab|A|525
6Z1P|1|Ab|U|526
6Z1P|1|Ab|A|527
6Z1P|1|Ab|G|528

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AF

bL35m

Chain Aq

Ribosomal protein L15, putative