HL_6Z1P_019

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6Z1P|1|Ab|A|656, 6Z1P|1|Ab|G|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_019 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.1785

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Ab|U|654
6Z1P|1|Ab|G|655
6Z1P|1|Ab|A|656
6Z1P|1|Ab|A|657
6Z1P|1|Ab|A|658
6Z1P|1|Ab|G|659
6Z1P|1|Ab|G|660

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2