HL_6Z1P_022

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCUAAGG

Length

8 nucleotides

Bulged bases

6Z1P|1|Ab|U|826, 6Z1P|1|Ab|G|829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_022 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2292

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6Z1P|1|Ab|C|823
6Z1P|1|Ab|G|824
6Z1P|1|Ab|C|825
6Z1P|1|Ab|U|826
6Z1P|1|Ab|A|827
6Z1P|1|Ab|A|828
6Z1P|1|Ab|G|829
6Z1P|1|Ab|G|830

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AQ

mL102

Chain Ar

Ribosomal protein L16