HL_6Z1P_028

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_028 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.1779

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6Z1P|1|Ab|U|1098
6Z1P|1|Ab|G|1099
6Z1P|1|Ab|U|1100
6Z1P|1|Ab|G|1101
6Z1P|1|Ab|A|1102
6Z1P|1|Ab|A|1103

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AJ

Ribosomal protein L51/S25/CI-B8 domain protein

Chain Au

50S ribosomal protein L20

Chain Av

50S ribosomal protein L21