HL_6Z1P_029

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_029 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1651

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6Z1P|1|Ab|G|1155
6Z1P|1|Ab|U|1156
6Z1P|1|Ab|G|1157
6Z1P|1|Ab|A|1158
6Z1P|1|Ab|G|1159
6Z1P|1|Ab|A|1160
6Z1P|1|Ab|A|1161
6Z1P|1|Ab|U|1162
6Z1P|1|Ab|C|1163

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AT

Signal peptide-binding domain protein

Chain As

50S ribosomal protein L17