HL_6Z1P_030

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUAAUC

Length

7 nucleotides

Bulged bases

6Z1P|1|Ab|A|1198, 6Z1P|1|Ab|U|1202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_030 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.2574

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

6Z1P|1|Ab|G|1197
6Z1P|1|Ab|A|1198
6Z1P|1|Ab|U|1199
6Z1P|1|Ab|A|1200
6Z1P|1|Ab|A|1201
6Z1P|1|Ab|U|1202
6Z1P|1|Ab|C|1203

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain As

50S ribosomal protein L17

Chain Aw

Ribosomal protein L22/L17e