HL_6Z1P_041

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6Z1P|1|Ab|U|1674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_041 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.17

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6Z1P|1|Ab|G|1668
6Z1P|1|Ab|G|1669
6Z1P|1|Ab|U|1670
6Z1P|1|Ab|A|1671
6Z1P|1|Ab|A|1672
6Z1P|1|Ab|G|1673
6Z1P|1|Ab|U|1674
6Z1P|1|Ab|U|1675
6Z1P|1|Ab|C|1676

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ap

Ribosomal protein L14

Chain Bb

Small subunit ribosomal RNA; SSU rRNA