HL_6Z1P_042

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6Z1P|1|Ab|A|1749, 6Z1P|1|Ab|A|1750, 6Z1P|1|Ab|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_042 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2185

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6Z1P|1|Ab|G|1746
6Z1P|1|Ab|U|1747
6Z1P|1|Ab|G|1748
6Z1P|1|Ab|A|1749
6Z1P|1|Ab|A|1750
6Z1P|1|Ab|G|1751
6Z1P|1|Ab|A|1752
6Z1P|1|Ab|U|1753
6Z1P|1|Ab|G|1754
6Z1P|1|Ab|C|1755

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AQ

mL102

Chain Ad

50S ribosomal protein L3

Chain Av

50S ribosomal protein L21