HL_6Z1P_045

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6Z1P|1|Ab|G|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_045 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1669

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6Z1P|1|Ab|C|1942
6Z1P|1|Ab|U|1943
6Z1P|1|Ab|G|1944
6Z1P|1|Ab|G|1945
6Z1P|1|Ab|G|1946
6Z1P|1|Ab|G|1947
6Z1P|1|Ab|C|1948
6Z1P|1|Ab|G|1949
6Z1P|1|Ab|G|1950

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AA

50S ribosomal protein L27

Chain Ar

Ribosomal protein L16