HL_6Z1P_048

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGAAUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_048 not in the Motif Atlas

Geometric match to HL_7RQB_056

Geometric discrepancy: 0.1695

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6Z1P|1|Ab|U|2018
6Z1P|1|Ab|A|2019
6Z1P|1|Ab|G|2020
6Z1P|1|Ab|A|2021
6Z1P|1|Ab|A|2022
6Z1P|1|Ab|U|2023
6Z1P|1|Ab|G|2024
6Z1P|1|Ab|A|2025

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AA

50S ribosomal protein L27

Chain AH

mL40

Chain Ar

Ribosomal protein L16