HL_6Z1P_053

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGGACAAUC

Length

10 nucleotides

Bulged bases

6Z1P|1|Ab|G|2223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_053 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3592

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

6Z1P|1|Ab|G|2221
6Z1P|1|Ab|U|2222
6Z1P|1|Ab|G|2223
6Z1P|1|Ab|G|2224
6Z1P|1|Ab|A|2225
6Z1P|1|Ab|C|2226
6Z1P|1|Ab|A|2227
6Z1P|1|Ab|A|2228
6Z1P|1|Ab|U|2229
6Z1P|1|Ab|C|2230

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AG

Ribosomal protein

Chain AM

mL53

Chain Ag

Ymf60