HL_6Z1P_057

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAAUAAAUAA

Length

10 nucleotides

Bulged bases

6Z1P|1|Ab|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_057 not in the Motif Atlas

Geometric match to HL_4LCK_002

Geometric discrepancy: 0.3777

The information below is about HL_4LCK_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6Z1P|1|Ab|U|2395
6Z1P|1|Ab|A|2396
6Z1P|1|Ab|A|2397
6Z1P|1|Ab|U|2398
6Z1P|1|Ab|A|2399
6Z1P|1|Ab|A|2400
6Z1P|1|Ab|A|2401
6Z1P|1|Ab|U|2402
6Z1P|1|Ab|A|2403
6Z1P|1|Ab|A|2404

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain As

50S ribosomal protein L17