HL_6Z1P_069

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_069 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.1414

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6Z1P|1|Bb|C|399
6Z1P|1|Bb|G|400
6Z1P|1|Bb|A|401
6Z1P|1|Bb|A|402
6Z1P|1|Bb|A|403
6Z1P|1|Bb|G|404

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BD

IGR motif protein

Chain Ba

SSU rRNA_1

Chain Bp

30S ribosomal protein S16

Chain Bv

mS26