HL_6Z1P_070

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_070 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1732

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Bb|A|439
6Z1P|1|Bb|G|440
6Z1P|1|Bb|C|441
6Z1P|1|Bb|A|442
6Z1P|1|Bb|A|443
6Z1P|1|Bb|U|444

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BQ

mS85

Chain BS

mS87

Chain Bx

mS31