HL_6Z1P_072

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_072 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2751

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6Z1P|1|Bb|C|517
6Z1P|1|Bb|A|518
6Z1P|1|Bb|G|519
6Z1P|1|Bb|C|520
6Z1P|1|Bb|C|521
6Z1P|1|Bb|G|522

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ba

SSU rRNA_1

Chain Bl

Ribosomal protein S12