HL_6Z1P_073

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAAAGUCAAUUAAAAACCUAAU

Length

22 nucleotides

Bulged bases

6Z1P|1|Bb|A|607, 6Z1P|1|Bb|U|609, 6Z1P|1|Bb|U|610, 6Z1P|1|Bb|A|611, 6Z1P|1|Bb|A|612, 6Z1P|1|Bb|C|616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z1P|1|Bb|A|600
6Z1P|1|Bb|A|601
6Z1P|1|Bb|A|602
6Z1P|1|Bb|A|603
6Z1P|1|Bb|G|604
6Z1P|1|Bb|U|605
6Z1P|1|Bb|C|606
6Z1P|1|Bb|A|607
6Z1P|1|Bb|A|608
6Z1P|1|Bb|U|609
6Z1P|1|Bb|U|610
6Z1P|1|Bb|A|611
6Z1P|1|Bb|A|612
6Z1P|1|Bb|A|613
6Z1P|1|Bb|A|614
6Z1P|1|Bb|A|615
6Z1P|1|Bb|C|616
6Z1P|1|Bb|C|617
6Z1P|1|Bb|U|618
6Z1P|1|Bb|A|619
6Z1P|1|Bb|A|620
6Z1P|1|Bb|U|621

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BE

mS45

Chain BI

Enoyl-CoA hydratase/isomerase

Chain Ba

SSU rRNA_1

Chain Be

Ymf76

Chain Bp

30S ribosomal protein S16

Chain Bq

30S ribosomal protein S17