HL_6Z1P_076

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAGUUUCC

Length

11 nucleotides

Bulged bases

6Z1P|1|Bb|G|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_076 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1643

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Bb|G|775
6Z1P|1|Bb|A|776
6Z1P|1|Bb|U|777
6Z1P|1|Bb|U|778
6Z1P|1|Bb|A|779
6Z1P|1|Bb|G|780
6Z1P|1|Bb|U|781
6Z1P|1|Bb|U|782
6Z1P|1|Bb|U|783
6Z1P|1|Bb|C|784
6Z1P|1|Bb|C|785

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Bk

Ymf61

Chain Bt

bS21m