HL_6Z1P_085
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAUCUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 6Z1P|1|Bb|U|1166, 6Z1P|1|Bb|C|1167, 6Z1P|1|Bb|U|1168, 6Z1P|1|Bb|U|1170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z1P_085 not in the Motif Atlas
- Geometric match to HL_5J7L_200
- Geometric discrepancy: 0.3734
- The information below is about HL_5J7L_200
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_08100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Z1P|1|Bb|G|1163
6Z1P|1|Bb|A|1164
6Z1P|1|Bb|A|1165
6Z1P|1|Bb|U|1166
6Z1P|1|Bb|C|1167
6Z1P|1|Bb|U|1168
6Z1P|1|Bb|A|1169
6Z1P|1|Bb|U|1170
6Z1P|1|Bb|U|1171
6Z1P|1|Bb|C|1172
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain BG
- mS76
- Chain BK
- mS79
- Chain Bc
- Ymf73
- Chain Bf
- 30S ribosomal protein S5
- Chain Bi
- Ribosomal protein S9
- Chain Br
- Ribosomal protein S18
- Chain Bt
- bS21m
- Chain Bu
- mS23
- Chain Bw
- Ribosomal death-associated protein
Coloring options: