HL_6Z1P_087
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGAAAUUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z1P_087 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.349
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Z1P|1|Bb|A|1325
6Z1P|1|Bb|U|1326
6Z1P|1|Bb|G|1327
6Z1P|1|Bb|A|1328
6Z1P|1|Bb|A|1329
6Z1P|1|Bb|A|1330
6Z1P|1|Bb|U|1331
6Z1P|1|Bb|U|1332
6Z1P|1|Bb|C|1333
6Z1P|1|Bb|U|1334
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain Bm
- Ribosomal protein S13
- Chain Bn
- Ribosomal protein S14
- Chain Bs
- Ribosomal protein S19
- Chain Bx
- mS31
- Chain By
- mS33
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