HL_6Z1P_092
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAACAAAUUUA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z1P_092 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.2817
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_86621.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6Z1P|1|Aa|U|53
6Z1P|1|Aa|A|54
6Z1P|1|Aa|A|55
6Z1P|1|Aa|A|56
6Z1P|1|Aa|C|57
6Z1P|1|Aa|A|58
6Z1P|1|Aa|A|59
6Z1P|1|Aa|A|60
6Z1P|1|Aa|U|61
6Z1P|1|Aa|U|62
6Z1P|1|Aa|U|63
6Z1P|1|Aa|A|64
Current chains
- Chain Aa
- LSU rRNA_1
Nearby chains
- Chain AC
- 39-S ribosomal protein L47
- Chain AI
- Ribosomal protein L27
- Chain AP
- mL101
- Chain AT
- Signal peptide-binding domain protein
- Chain Ab
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ax
- Ribosomal protein L23, putative
- Chain Ay
- 50S ribosomal protein L24
Coloring options: