HL_6Z6G_001

3D structure

PDB id

6Z6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of La Crosse virus polymerase at pre-initiation stage

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UAGUGUG

Length

7 nucleotides

Bulged bases

6Z6G|1|U|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6G_001 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.0894

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6Z6G|1|U|U|3
6Z6G|1|U|A|4
6Z6G|1|U|G|5
6Z6G|1|U|U|6
6Z6G|1|U|G|7
6Z6G|1|U|U|8
6Z6G|1|U|G|9

Current chains

Chain U

5'vRNA 1-10

Nearby chains

Chain A

RNA-directed RNA polymerase L