HL_6Z6J_005

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6Z6J|1|C1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1371

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6Z6J|1|C1|U|194
6Z6J|1|C1|U|195
6Z6J|1|C1|G|196
6Z6J|1|C1|G|197
6Z6J|1|C1|A|198
6Z6J|1|C1|A|199
6Z6J|1|C1|C|200
6Z6J|1|C1|A|201

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A

Chain Le

60S ribosomal protein L32