HL_6Z6J_023

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6Z6J|1|C1|A|1025, 6Z6J|1|C1|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6J|1|C1|C|1023
6Z6J|1|C1|G|1024
6Z6J|1|C1|A|1025
6Z6J|1|C1|A|1026
6Z6J|1|C1|A|1027
6Z6J|1|C1|U|1028
6Z6J|1|C1|G|1029

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11-A

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A