HL_6Z6J_035

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6Z6J|1|C1|U|1606, 6Z6J|1|C1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.0974

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z6J|1|C1|G|1599
6Z6J|1|C1|U|1600
6Z6J|1|C1|U|1601
6Z6J|1|C1|A|1602
6Z6J|1|C1|A|1603
6Z6J|1|C1|G|1604
6Z6J|1|C1|A|1605
6Z6J|1|C1|U|1606
6Z6J|1|C1|U|1607
6Z6J|1|C1|C|1608

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LX

60S ribosomal protein L25

Chain Lg

60S ribosomal protein L34-A