HL_6Z6J_039

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6Z6J|1|C1|U|1765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_039 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.317

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6Z6J|1|C1|C|1759
6Z6J|1|C1|A|1760
6Z6J|1|C1|C|1761
6Z6J|1|C1|C|1762
6Z6J|1|C1|U|1763
6Z6J|1|C1|U|1764
6Z6J|1|C1|U|1765
6Z6J|1|C1|G|1766

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LU

60S ribosomal protein L22-A